Liu Group
P3DOCK
HELP
Result Example
PRIME
3dRPC
RMalign
1.Input Receptor Molecule(protein) using ONE of the following list options and chain id:
  • Upload your pdb file in PDB format:
  • OR provide your pdb file in PDB ID:
  • Assign the chain id of receptor:
2.Input ligand Molecule(RNA) using ONE of the following list options and chain id:
  • Upload your pdb file in PDB format:
  • OR provide your pdb file in PDB ID:
  • Assign the chain id of ligand:
3.optional:
  • Enter your Email:     
 

P3dock Parameters: Configure the detail parameter of P3dock

References:
  1. Jinfang Zheng, Xu Hong, Juan Xie, XiaoXue Tong, Shiyong Liu. P3DOCK: a protein-RNA docking webserver based on template-based and template-free docking. Bioinformatics, 7 June 2019 [PubMed] [PDF]
  2. Jinfang Zheng, Petras J.Kundrotas, Ilya A.V akser and Shiyong Liu. Template-based modeling of protein-RNA interactions. PLOS Computational Biology, 2016 Sep 23;12(9)[PubMed] [PDF]
  3. Yangyu Huang, Shiyong Liu, Dachuan Guo, Lin Li, Yi Xiao. A novel protocol for three-dimensional structure prediction of RNA-protein complexes. Scientific reports, May 28;3:1887 [PubMed] [PDF]
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