Liu Group
PRIME-3D2D(PDB)
PRIME-3D2D(yeast genome)
HELP
PRIME2.0
RMalign
1.Input Receptor Molecule(protein) using ONE of the following list options and chain id:
  • Upload your pdb file in PDB format:
  • OR provide your pdb file in PDB ID:
  • Assign the chain id of receptor:
2.Input ligand Molecule(RNA) using ONE of the following list options and chain id:
  • Upload your pdb file in PDB format:
  • OR provide your pdb file in PDB ID:
  • Assign the chain id of ligand:
3.optional:
  • Enter your Email:     
 

References:
    1. Juan Xie, Jinfang Zheng, Xu Hong, Xiaoxue Tong & Shiyong Liu. PRIME-3D2D is a 3D2D model to predict binding sites of protein-RNA interaction. Communications Biology [PubMed]
    2. Jinfang Zheng, Juan Xie, Xu Hong & Shiyong Liu. RMalign: an RNA structural alignment tool based on a novel scoring function RMscore. BMC Genomics [PubMed]